IL_6ZOJ_052

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOJ_052 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.147

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZOJ|1|2|A|1042
6ZOJ|1|2|G|1043
6ZOJ|1|2|G|1044
6ZOJ|1|2|U|1045
6ZOJ|1|2|U|1046
6ZOJ|1|2|C|1047
*
6ZOJ|1|2|G|1071
6ZOJ|1|2|U|1072
6ZOJ|1|2|U|1073

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26