IL_6ZOJ_065

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

6ZOJ|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZOJ|1|2|G|1281
6ZOJ|1|2|A|1282
6ZOJ|1|2|C|1283
6ZOJ|1|2|A|1284
6ZOJ|1|2|G|1285
6ZOJ|1|2|G|1286
6ZOJ|1|2|A|1287
6ZOJ|1|2|U|1288
6ZOJ|1|2|U|1289
6ZOJ|1|2|G|1290
*
6ZOJ|1|2|C|1309
6ZOJ|1|2|U|1310
6ZOJ|1|2|C|1311
6ZOJ|1|2|G|1312
6ZOJ|1|2|A|1313
6ZOJ|1|2|U|1314
6ZOJ|1|2|U|1315
6ZOJ|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain M

40S ribosomal protein S12

Chain d

40S ribosomal protein S29

Chain f

Ribosomal protein S27a