IL_6ZOK_010

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

6ZOK|1|2|G|113, 6ZOK|1|2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_010 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.139

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6ZOK|1|2|U|112
6ZOK|1|2|G|113
6ZOK|1|2|G|114
6ZOK|1|2|U|115
*
6ZOK|1|2|A|348
6ZOK|1|2|A|349

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11