3D structure

PDB id
6ZOK (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2-Nsp1-40S complex, focused on body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAC*GGCC
Length
7 nucleotides
Bulged bases
6ZOK|1|2|G|547
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZOK_030 not in the Motif Atlas
Geometric match to IL_5AOX_001
Geometric discrepancy: 0.1942
The information below is about IL_5AOX_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

6ZOK|1|2|G|535
6ZOK|1|2|A|536
6ZOK|1|2|C|537
*
6ZOK|1|2|G|546
6ZOK|1|2|G|547
6ZOK|1|2|C|548
6ZOK|1|2|C|549

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain e
40S ribosomal protein S30

Coloring options:


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