IL_6ZOK_030
3D structure
- PDB id
- 6ZOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, focused on body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAC*GGCC
- Length
- 7 nucleotides
- Bulged bases
- 6ZOK|1|2|G|547
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZOK_030 not in the Motif Atlas
- Geometric match to IL_5AOX_001
- Geometric discrepancy: 0.1942
- The information below is about IL_5AOX_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6ZOK|1|2|G|535
6ZOK|1|2|A|536
6ZOK|1|2|C|537
*
6ZOK|1|2|G|546
6ZOK|1|2|G|547
6ZOK|1|2|C|548
6ZOK|1|2|C|549
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain e
- 40S ribosomal protein S30
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