IL_6ZOK_074

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6ZOK|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_074 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1309

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6ZOK|1|2|G|665
6ZOK|1|2|U|666
6ZOK|1|2|U|667
6ZOK|1|2|A|668
6ZOK|1|2|A|669
6ZOK|1|2|A|670
6ZOK|1|2|A|671
*
6ZOK|1|2|U|1161
6ZOK|1|2|C|1162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain a

40S ribosomal protein S26