IL_6ZOK_076
3D structure
- PDB id
- 6ZOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, focused on body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZOK_076 not in the Motif Atlas
- Geometric match to IL_8VTW_093
- Geometric discrepancy: 0.3423
- The information below is about IL_8VTW_093
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6ZOK|1|2|U|801
6ZOK|1|2|A|802
6ZOK|1|2|C|803
*
6ZOK|1|2|G|860
6ZOK|1|2|A|861
6ZOK|1|2|A|862
6ZOK|1|2|U|863
6ZOK|1|2|A|864
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S7
- Chain L
- 40S ribosomal protein S11
- Chain W
- 40S ribosomal protein S15a
- Chain X
- 40S ribosomal protein S23
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