IL_6ZP4_012

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

6ZP4|1|2|C|142, 6ZP4|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|G|130
6ZP4|1|2|U|140
6ZP4|1|2|A|141
6ZP4|1|2|C|142
6ZP4|1|2|U|143
6ZP4|1|2|U|144
*
6ZP4|1|2|A|175
6ZP4|1|2|U|176
6ZP4|1|2|G|177
6ZP4|1|2|C|178
6ZP4|1|2|C|179
6ZP4|1|2|G|180
6ZP4|1|2|A|181
6ZP4|1|2|C|182

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6