IL_6ZP4_014

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_014 not in the Motif Atlas

Geometric match to IL_3CZW_002

Geometric discrepancy: 0.0966

The information below is about IL_3CZW_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6ZP4|1|2|U|152
6ZP4|1|2|G|153
6ZP4|1|2|U|154
*
6ZP4|1|2|A|164
6ZP4|1|2|G|165
6ZP4|1|2|A|166

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6

Chain z

40S ribosomal protein S24