IL_6ZP4_018

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|C|223
6ZP4|1|2|A|224
6ZP4|1|2|G|225
6ZP4|1|2|U|287
6ZP4|1|2|G|288
*
6ZP4|1|2|C|295
6ZP4|1|2|U|296
6ZP4|1|2|A|297
6ZP4|1|2|G|298

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

40S ribosomal protein S11

Chain q

40S ribosomal protein S4, X isoform

Chain r

40S ribosomal protein S6

Chain t

40S ribosomal protein S8