IL_6ZP4_045

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_045 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.095

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6ZP4|1|2|G|874
6ZP4|1|2|A|875
6ZP4|1|2|C|876
*
6ZP4|1|2|G|910
6ZP4|1|2|C|911
6ZP4|1|2|C|912

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain s

40S ribosomal protein S7