IL_6ZP4_048

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6ZP4|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_048 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2513

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6ZP4|1|2|G|925
6ZP4|1|2|A|926
6ZP4|1|2|C|927
*
6ZP4|1|2|G|1014
6ZP4|1|2|U|1015
6ZP4|1|2|U|1016
6ZP4|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Eukaryotic translation initiation factor 3 subunit C

Chain R

40S ribosomal protein S27

Chain m

40S ribosomal protein S13