IL_6ZP4_053

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGGUUC*GUUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|G|1041
6ZP4|1|2|A|1042
6ZP4|1|2|G|1043
6ZP4|1|2|G|1044
6ZP4|1|2|U|1045
6ZP4|1|2|U|1046
6ZP4|1|2|C|1047
*
6ZP4|1|2|G|1071
6ZP4|1|2|U|1072
6ZP4|1|2|U|1073
6ZP4|1|2|C|1074

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S26

Chain i

40S ribosomal protein S14

Chain m

40S ribosomal protein S13