IL_6ZP4_084

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCUAC*GUAAAAG

Length

13 nucleotides

Bulged bases

6ZP4|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|C|1708
6ZP4|1|2|G|1709
6ZP4|1|2|C|1710
6ZP4|1|2|U|1711
6ZP4|1|2|A|1712
6ZP4|1|2|C|1713
*
6ZP4|1|2|G|1820
6ZP4|1|2|U|1821
6ZP4|1|2|A|1822
6ZP4|1|2|A|1823
6ZP4|1|2|A|1824
6ZP4|1|2|A|1825
6ZP4|1|2|G|1826

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Eukaryotic translation initiation factor 1A, X-chromosomal

Chain W

60S ribosomal protein L41

Chain Z

Eukaryotic translation initiation factor 1

Chain j

40S ribosomal protein S23