IL_6ZP4_085

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_085 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.1772

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZP4|1|2|U|1714
6ZP4|1|2|A|1715
6ZP4|1|2|C|1716
*
6ZP4|1|2|G|1817
6ZP4|1|2|A|1818
6ZP4|1|2|A|1819

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L41

Chain j

40S ribosomal protein S23