IL_6ZQC_007

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*CUG

Length

5 nucleotides

Bulged bases

6ZQC|1|D2|U|129

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQC_007 not in the Motif Atlas

Geometric match to IL_5TBW_032

Geometric discrepancy: 0.3727

The information below is about IL_5TBW_032

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZQC|1|D2|U|116
6ZQC|1|D2|G|117
*
6ZQC|1|D2|C|128
6ZQC|1|D2|U|129
6ZQC|1|D2|G|130

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain US

Nucleolar complex protein 4