IL_6ZQC_010

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQC_010 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1366

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6ZQC|1|D2|A|187
6ZQC|1|D2|A|188
6ZQC|1|D2|U|189
*
6ZQC|1|D2|A|208
6ZQC|1|D2|G|209
6ZQC|1|D2|U|210

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UK

U3 small nucleolar RNA-associated protein 11

Chain UP

Bud site selection protein 21