IL_6ZQC_012

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

6ZQC|1|D2|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQC_012 not in the Motif Atlas

Geometric match to IL_8B0X_146

Geometric discrepancy: 0.3632

The information below is about IL_8B0X_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6ZQC|1|D2|C|245
6ZQC|1|D2|G|246
*
6ZQC|1|D2|U|266
6ZQC|1|D2|U|267
6ZQC|1|D2|G|268

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DQ

40S ribosomal protein S16-A

Chain UK

U3 small nucleolar RNA-associated protein 11