IL_6ZQC_014
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQC_014 not in the Motif Atlas
- Geometric match to IL_4V9F_068
- Geometric discrepancy: 0.2449
- The information below is about IL_4V9F_068
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.2
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 23
Unit IDs
6ZQC|1|D2|G|337
6ZQC|1|D2|A|338
6ZQC|1|D2|A|339
6ZQC|1|D2|U|340
*
6ZQC|1|D2|A|386
6ZQC|1|D2|C|387
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain CI
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain JN
- Protein FAF1
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UN
- U3 small nucleolar RNA-associated protein 14
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