IL_6ZQC_024
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAACU*ACU
- Length
- 8 nucleotides
- Bulged bases
- 6ZQC|1|D2|C|469
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQC_024 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.3516
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
6ZQC|1|D2|A|466
6ZQC|1|D2|A|467
6ZQC|1|D2|A|468
6ZQC|1|D2|C|469
6ZQC|1|D2|U|470
*
6ZQC|1|D4|A|48
6ZQC|1|D4|C|49
6ZQC|1|D4|U|50
Current chains
- Chain D2
- 5ETS RNA
- Chain D4
- U3 snoRNA
Nearby chains
- Chain CI
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UJ
- U3 small nucleolar RNA-associated protein 10
- Chain UX
- rRNA-processing protein FCF1
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