IL_6ZQC_041

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUCAA*UUUCAACGG

Length

16 nucleotides

Bulged bases

6ZQC|1|D3|U|313, 6ZQC|1|D3|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQC|1|D3|C|310
6ZQC|1|D3|U|311
6ZQC|1|D3|A|312
6ZQC|1|D3|U|313
6ZQC|1|D3|C|314
6ZQC|1|D3|A|315
6ZQC|1|D3|A|316
*
6ZQC|1|D3|U|348
6ZQC|1|D3|U|349
6ZQC|1|D3|U|350
6ZQC|1|D3|C|351
6ZQC|1|D3|A|352
6ZQC|1|D3|A|353
6ZQC|1|D3|C|354
6ZQC|1|D3|G|355
6ZQC|1|D3|G|356

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DI

40S ribosomal protein S8-A

Chain DL

40S ribosomal protein S11-A

Chain JO

KRR1 small subunit processome component