IL_6ZQC_070
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACUA*UUAC
- Length
- 9 nucleotides
- Bulged bases
- 6ZQC|1|D3|A|1036
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQC_070 not in the Motif Atlas
- Geometric match to IL_5TBW_041
- Geometric discrepancy: 0.2932
- The information below is about IL_5TBW_041
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6ZQC|1|D3|G|1035
6ZQC|1|D3|A|1036
6ZQC|1|D3|C|1037
6ZQC|1|D3|U|1038
6ZQC|1|D3|A|1039
*
6ZQC|1|D3|U|1079
6ZQC|1|D3|U|1080
6ZQC|1|D3|A|1081
6ZQC|1|D3|C|1082
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DW
- 40S ribosomal protein S22-A
- Chain Db
- 40S ribosomal protein S27-A
- Chain JN
- Protein FAF1
- Chain JP
- Protein SOF1
- Chain UX
- rRNA-processing protein FCF1
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