IL_6ZQC_096

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAG*CGAUGAUC

Length

13 nucleotides

Bulged bases

6ZQC|1|D4|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQC|1|D4|G|111
6ZQC|1|D4|U|112
6ZQC|1|D4|G|113
6ZQC|1|D4|A|114
6ZQC|1|D4|G|115
*
6ZQC|1|D4|C|252
6ZQC|1|D4|G|253
6ZQC|1|D4|A|254
6ZQC|1|D4|U|255
6ZQC|1|D4|G|256
6ZQC|1|D4|A|257
6ZQC|1|D4|U|258
6ZQC|1|D4|C|259

Current chains

Chain D4

U3 snoRNA

Nearby chains

Chain CD

Nucleolar protein 56

Chain CG

13 kDa ribonucleoprotein-associated protein

Chain CH

Ribosomal RNA-processing protein 9

Chain UC

Something about silencing protein 10