IL_6ZQC_102

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUG*UUU

Length

7 nucleotides

Bulged bases

6ZQC|1|D2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQC|1|D2|G|168
6ZQC|1|D2|A|169
6ZQC|1|D2|U|170
6ZQC|1|D2|G|171
*
6ZQC|1|D2|U|225
6ZQC|1|D2|U|226
6ZQC|1|D2|U|227

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CF

13 kDa ribonucleoprotein-associated protein

Chain UD

U3 small nucleolar RNA-associated protein 4

Chain UO

U3 small nucleolar RNA-associated protein 15

Chain UP

Bud site selection protein 21