IL_6ZQC_107

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGAUG*CAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQC|1|D3|U|318
6ZQC|1|D3|U|319
6ZQC|1|D3|U|320
6ZQC|1|D3|C|321
6ZQC|1|D3|G|322
6ZQC|1|D3|A|323
6ZQC|1|D3|U|324
6ZQC|1|D3|G|325
*
6ZQC|1|D3|C|343
6ZQC|1|D3|A|344
6ZQC|1|D3|U|345
6ZQC|1|D3|G|346

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DI

40S ribosomal protein S8-A

Chain DL

40S ribosomal protein S11-A

Chain JC

Ribosome biogenesis protein ENP2

Chain JK

Protein BFR2

Chain JO

KRR1 small subunit processome component