IL_6ZQC_108

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGCAAGUC*GCAGCCGCGGUAAUUCCAGC

Length

29 nucleotides

Bulged bases

6ZQC|1|D3|A|556, 6ZQC|1|D3|C|572, 6ZQC|1|D3|C|573, 6ZQC|1|D3|A|579, 6ZQC|1|D3|A|585, 6ZQC|1|D3|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQC|1|D3|G|551
6ZQC|1|D3|G|552
6ZQC|1|D3|G|553
6ZQC|1|D3|C|554
6ZQC|1|D3|A|555
6ZQC|1|D3|A|556
6ZQC|1|D3|G|557
6ZQC|1|D3|U|558
6ZQC|1|D3|C|559
*
6ZQC|1|D3|G|568
6ZQC|1|D3|C|569
6ZQC|1|D3|A|570
6ZQC|1|D3|G|571
6ZQC|1|D3|C|572
6ZQC|1|D3|C|573
6ZQC|1|D3|G|574
6ZQC|1|D3|C|575
6ZQC|1|D3|G|576
6ZQC|1|D3|G|577
6ZQC|1|D3|U|578
6ZQC|1|D3|A|579
6ZQC|1|D3|A|580
6ZQC|1|D3|U|581
6ZQC|1|D3|U|582
6ZQC|1|D3|C|583
6ZQC|1|D3|C|584
6ZQC|1|D3|A|585
6ZQC|1|D3|G|586
6ZQC|1|D3|C|587

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UB

Nucleolar complex protein 14

Chain UC

Something about silencing protein 10

Chain UK

U3 small nucleolar RNA-associated protein 11