IL_6ZQD_033
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGCAAGUC*GCAGCCGCGGUAAUUCC
- Length
- 25 nucleotides
- Bulged bases
- 6ZQD|1|D3|A|556, 6ZQD|1|D3|C|572, 6ZQD|1|D3|C|573, 6ZQD|1|D3|A|579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZQD|1|D3|G|552
6ZQD|1|D3|G|553
6ZQD|1|D3|C|554
6ZQD|1|D3|A|555
6ZQD|1|D3|A|556
6ZQD|1|D3|G|557
6ZQD|1|D3|U|558
6ZQD|1|D3|C|559
*
6ZQD|1|D3|G|568
6ZQD|1|D3|C|569
6ZQD|1|D3|A|570
6ZQD|1|D3|G|571
6ZQD|1|D3|C|572
6ZQD|1|D3|C|573
6ZQD|1|D3|G|574
6ZQD|1|D3|C|575
6ZQD|1|D3|G|576
6ZQD|1|D3|G|577
6ZQD|1|D3|U|578
6ZQD|1|D3|A|579
6ZQD|1|D3|A|580
6ZQD|1|D3|U|581
6ZQD|1|D3|U|582
6ZQD|1|D3|C|583
6ZQD|1|D3|C|584
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DX
- 40S ribosomal protein S23-A
- Chain UB
- Nucleolar complex protein 14
- Chain UC
- Something about silencing protein 10
- Chain UK
- U3 small nucleolar RNA-associated protein 11
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