IL_6ZQD_044
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQD_044 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.5806
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZQD|1|D3|G|751
6ZQD|1|D3|A|752
6ZQD|1|D3|A|753
6ZQD|1|D3|A|754
6ZQD|1|D3|A|755
6ZQD|1|D3|A|756
6ZQD|1|D3|A|757
6ZQD|1|D3|U|758
6ZQD|1|D3|U|759
*
6ZQD|1|D3|A|791
6ZQD|1|D3|U|792
6ZQD|1|D3|A|793
6ZQD|1|D3|U|794
6ZQD|1|D3|U|795
6ZQD|1|D3|A|796
6ZQD|1|D3|G|797
6ZQD|1|D3|C|798
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain DW
- 40S ribosomal protein S22-A
- Chain UT
- U3 small nucleolar RNA-associated protein 20
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