IL_6ZQG_005

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

6ZQG|1|D3|A|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_005 not in the Motif Atlas

Homologous match to IL_4V88_389

Geometric discrepancy: 0.1615

The information below is about IL_4V88_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6ZQG|1|D3|U|58
6ZQG|1|D3|C|59
6ZQG|1|D3|U|60
6ZQG|1|D3|A|61
6ZQG|1|D3|A|62
6ZQG|1|D3|G|63
*
6ZQG|1|D3|C|87
6ZQG|1|D3|U|88
6ZQG|1|D3|G|89

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DY

40S ribosomal protein S24-A