IL_6ZQG_012
3D structure
- PDB id
- 6ZQG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGACC*GGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQG_012 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3335
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6ZQG|1|D3|C|186
6ZQG|1|D3|G|187
6ZQG|1|D3|A|188
6ZQG|1|D3|C|189
6ZQG|1|D3|C|190
*
6ZQG|1|D3|G|195
6ZQG|1|D3|G|196
6ZQG|1|D3|A|197
6ZQG|1|D3|A|198
6ZQG|1|D3|G|199
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DI
- 40S ribosomal protein S8-A
Coloring options: