IL_6ZQG_019

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6ZQG|1|D3|U|320, 6ZQG|1|D3|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_019 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3335

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZQG|1|D3|U|318
6ZQG|1|D3|U|319
6ZQG|1|D3|U|320
6ZQG|1|D3|C|321
6ZQG|1|D3|G|322
6ZQG|1|D3|A|323
*
6ZQG|1|D3|U|345
6ZQG|1|D3|G|346

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DI

40S ribosomal protein S8-A

Chain DL

40S ribosomal protein S11-A

Chain JD

Probable ATP-dependent RNA helicase DHR1