IL_6ZQG_027
3D structure
- PDB id
- 6ZQG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAG*CGAGGAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQG_027 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1606
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6ZQG|1|D3|G|514
6ZQG|1|D3|A|515
6ZQG|1|D3|G|516
*
6ZQG|1|D3|C|536
6ZQG|1|D3|G|537
6ZQG|1|D3|A|538
6ZQG|1|D3|G|539
6ZQG|1|D3|G|540
6ZQG|1|D3|A|541
6ZQG|1|D3|A|542
6ZQG|1|D3|C|543
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DJ
- 40S ribosomal protein S9-A
- Chain UC
- Something about silencing protein 10
Coloring options: