IL_6ZQG_031

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCAAGUC*GCAGCCGCGGUAAUUCC

Length

25 nucleotides

Bulged bases

6ZQG|1|D3|A|556, 6ZQG|1|D3|C|572, 6ZQG|1|D3|C|573, 6ZQG|1|D3|G|574, 6ZQG|1|D3|C|575, 6ZQG|1|D3|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQG|1|D3|G|552
6ZQG|1|D3|G|553
6ZQG|1|D3|C|554
6ZQG|1|D3|A|555
6ZQG|1|D3|A|556
6ZQG|1|D3|G|557
6ZQG|1|D3|U|558
6ZQG|1|D3|C|559
*
6ZQG|1|D3|G|568
6ZQG|1|D3|C|569
6ZQG|1|D3|A|570
6ZQG|1|D3|G|571
6ZQG|1|D3|C|572
6ZQG|1|D3|C|573
6ZQG|1|D3|G|574
6ZQG|1|D3|C|575
6ZQG|1|D3|G|576
6ZQG|1|D3|G|577
6ZQG|1|D3|U|578
6ZQG|1|D3|A|579
6ZQG|1|D3|A|580
6ZQG|1|D3|U|581
6ZQG|1|D3|U|582
6ZQG|1|D3|C|583
6ZQG|1|D3|C|584

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UB

Nucleolar complex protein 14

Chain UC

Something about silencing protein 10