IL_6ZQG_051

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_051 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.0887

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZQG|1|D3|G|985
6ZQG|1|D3|G|986
6ZQG|1|D3|G|987
6ZQG|1|D3|A|988
6ZQG|1|D3|U|989
6ZQG|1|D3|C|990
*
6ZQG|1|D3|G|1014
6ZQG|1|D3|U|1015
6ZQG|1|D3|C|1016

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DO

40S ribosomal protein S14-A

Chain JL

Dimethyladenosine transferase