IL_6ZQG_056
3D structure
- PDB id
- 6ZQG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGG*CG
- Length
- 5 nucleotides
- Bulged bases
- 6ZQG|1|D3|G|1118
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQG_056 not in the Motif Atlas
- Geometric match to IL_5TBW_037
- Geometric discrepancy: 0.3285
- The information below is about IL_5TBW_037
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
6ZQG|1|D3|U|1117
6ZQG|1|D3|G|1118
6ZQG|1|D3|G|1119
*
6ZQG|1|D4|C|6
6ZQG|1|D4|G|7
Current chains
- Chain D3
- 18S rRNA
- Chain D4
- U3 snoRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DX
- 40S ribosomal protein S23-A
- Chain JD
- Probable ATP-dependent RNA helicase DHR1
- Chain JL
- Dimethyladenosine transferase
- Chain UB
- Nucleolar complex protein 14
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