IL_6ZQG_062

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

6ZQG|1|D3|U|1491, 6ZQG|1|D3|A|1516

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_062 not in the Motif Atlas

Homologous match to IL_4V88_460

Geometric discrepancy: 0.3259

The information below is about IL_4V88_460

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_77092.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZQG|1|D3|G|1488
6ZQG|1|D3|U|1489
6ZQG|1|D3|C|1490
6ZQG|1|D3|U|1491
6ZQG|1|D3|A|1492
6ZQG|1|D3|A|1493
6ZQG|1|D3|C|1494
*
6ZQG|1|D3|G|1513
6ZQG|1|D3|U|1514
6ZQG|1|D3|A|1515
6ZQG|1|D3|A|1516
6ZQG|1|D3|U|1517
6ZQG|1|D3|C|1518

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1