IL_6ZQG_064

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_064 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.3859

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6ZQG|1|D3|G|1499
6ZQG|1|D3|C|1500
*
6ZQG|1|D3|G|1507
6ZQG|1|D3|U|1508
6ZQG|1|D3|C|1509

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DT

40S ribosomal protein S19-A