IL_6ZQG_065
3D structure
- PDB id
- 6ZQG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQG_065 not in the Motif Atlas
- Homologous match to IL_4V88_462
- Geometric discrepancy: 0.1816
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZQG|1|D3|G|1540
6ZQG|1|D3|G|1541
6ZQG|1|D3|G|1542
6ZQG|1|D3|A|1543
6ZQG|1|D3|U|1544
6ZQG|1|D3|A|1545
*
6ZQG|1|D3|U|1566
6ZQG|1|D3|U|1567
6ZQG|1|D3|C|1568
6ZQG|1|D3|A|1569
6ZQG|1|D3|A|1570
6ZQG|1|D3|C|1571
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DS
- 40S ribosomal protein S18-A,40S ribosomal protein S18-A,Rps18
- Chain DT
- 40S ribosomal protein S19-A
- Chain JG
- Ribosomal RNA small subunit methyltransferase NEP1
- Chain UB
- Nucleolar complex protein 14
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