IL_6ZQG_072

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCCAGCGA*UUGUGAAACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQG|1|D3|A|1479
6ZQG|1|D3|G|1480
6ZQG|1|D3|C|1481
6ZQG|1|D3|C|1482
6ZQG|1|D3|A|1483
6ZQG|1|D3|G|1484
6ZQG|1|D3|C|1485
6ZQG|1|D3|G|1486
6ZQG|1|D3|A|1487
*
6ZQG|1|D3|U|1519
6ZQG|1|D3|U|1520
6ZQG|1|D3|G|1521
6ZQG|1|D3|U|1522
6ZQG|1|D3|G|1523
6ZQG|1|D3|A|1524
6ZQG|1|D3|A|1525
6ZQG|1|D3|A|1526
6ZQG|1|D3|C|1527
6ZQG|1|D3|U|1528

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CL

Ribosome biogenesis protein BMS1

Chain DF

Rps5p

Chain DQ

40S ribosomal protein S16-A

Chain DT

40S ribosomal protein S19-A