IL_6ZSA_066

3D structure

PDB id

6ZSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSA_066 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1768

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6ZSA|1|XA|A|2306
6ZSA|1|XA|U|2307
6ZSA|1|XA|A|2308
6ZSA|1|XA|A|2309
6ZSA|1|XA|G|2310
6ZSA|1|XA|U|2311
6ZSA|1|XA|A|2312
6ZSA|1|XA|A|2313
*
6ZSA|1|XA|U|2674
6ZSA|1|XA|G|2675
6ZSA|1|XA|A|2676
6ZSA|1|XA|A|2677
6ZSA|1|XA|A|2678
6ZSA|1|XA|U|2679
6ZSA|1|XA|U|2680

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain XF

39S ribosomal protein L4, mitochondrial

Chain XR

39S ribosomal protein L20, mitochondrial

Chain XT

39S ribosomal protein L22, mitochondrial