IL_6ZSB_043

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAAGU*AUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSB_043 not in the Motif Atlas

Geometric match to IL_1GID_010

Geometric discrepancy: 0.3852

The information below is about IL_1GID_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.4

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

6ZSB|1|AA|C|1500
6ZSB|1|AA|A|1501
6ZSB|1|AA|A|1502
6ZSB|1|AA|G|1503
6ZSB|1|AA|U|1504
*
6ZSB|1|AA|A|1546
6ZSB|1|AA|U|1547
6ZSB|1|AA|A|1548
6ZSB|1|AA|G|1549

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain XA

Large subunit ribosomal RNA; LSU rRNA

Chain XL

39S ribosomal protein L14, mitochondrial