IL_6ZSB_071

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

6ZSB|1|XA|U|2654, 6ZSB|1|XA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSB_071 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.253

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6ZSB|1|XA|A|2473
6ZSB|1|XA|C|2474
6ZSB|1|XA|U|2475
6ZSB|1|XA|C|2476
6ZSB|1|XA|G|2477
6ZSB|1|XA|G|2478
*
6ZSB|1|XA|C|2653
6ZSB|1|XA|U|2654
6ZSB|1|XA|G|2655
6ZSB|1|XA|U|2656

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain XQ

39S ribosomal protein L19, mitochondrial