IL_6ZSB_088

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSB_088 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1598

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6ZSB|1|XA|A|2946
6ZSB|1|XA|U|2947
6ZSB|1|XA|C|2948
*
6ZSB|1|XA|G|2976
6ZSB|1|XA|G|2977
6ZSB|1|XA|U|2978
6ZSB|1|XA|U|2979
6ZSB|1|XA|U|2980

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

39S ribosomal protein L10, mitochondrial

Chain XN

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial