IL_6ZSC_108

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSC_108 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1335

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6ZSC|1|XA|G|2470
6ZSC|1|XA|G|2471
6ZSC|1|XA|A|2472
6ZSC|1|XA|A|2473
6ZSC|1|XA|C|2474
6ZSC|1|XA|U|2475
6ZSC|1|XA|C|2476
6ZSC|1|XA|G|2477
6ZSC|1|XA|G|2478
*
6ZSC|1|XA|C|2653
6ZSC|1|XA|U|2654
6ZSC|1|XA|G|2655
6ZSC|1|XA|U|2656
6ZSC|1|XA|C|2657

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain XQ

39S ribosomal protein L19, mitochondrial