IL_6ZSD_003

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_003 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.3003

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

6ZSD|1|AA|U|681
6ZSD|1|AA|A|682
*
6ZSD|1|AA|U|864
6ZSD|1|AA|A|865
6ZSD|1|AA|A|866

Current chains

Chain AA

12SrRNA

Nearby chains

Chain AO

28S ribosomal protein S18b, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial