IL_6ZSD_013

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

6ZSD|1|AA|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_013 not in the Motif Atlas

Geometric match to IL_5TBW_123

Geometric discrepancy: 0.3094

The information below is about IL_5TBW_123

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZSD|1|AA|U|838
6ZSD|1|AA|A|839
*
6ZSD|1|AA|U|850
6ZSD|1|AA|A|851
6ZSD|1|AA|A|852

Current chains

Chain AA

12SrRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial