IL_6ZSD_032

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUAC*GUG

Length

8 nucleotides

Bulged bases

6ZSD|1|AA|U|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_032 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.2269

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZSD|1|AA|U|1257
6ZSD|1|AA|A|1258
6ZSD|1|AA|U|1259
6ZSD|1|AA|A|1260
6ZSD|1|AA|C|1261
*
6ZSD|1|AA|G|1334
6ZSD|1|AA|U|1335
6ZSD|1|AA|G|1336

Current chains

Chain AA

12SrRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial