IL_6ZSD_043

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAGU*AUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_043 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.3831

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6ZSD|1|AA|C|1500
6ZSD|1|AA|A|1501
6ZSD|1|AA|A|1502
6ZSD|1|AA|G|1503
6ZSD|1|AA|U|1504
*
6ZSD|1|AA|A|1546
6ZSD|1|AA|U|1547
6ZSD|1|AA|A|1548
6ZSD|1|AA|G|1549

Current chains

Chain AA

12SrRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain XA

Large subunit ribosomal RNA; LSU rRNA

Chain XL

39S ribosomal protein L14, mitochondrial