IL_6ZSD_045

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

6ZSD|1|AA|C|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_045 not in the Motif Atlas

Geometric match to IL_3SN2_002

Geometric discrepancy: 0.3909

The information below is about IL_3SN2_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

6ZSD|1|AA|U|1510
6ZSD|1|AA|C|1511
*
6ZSD|1|AA|G|1538
6ZSD|1|AA|C|1539
6ZSD|1|AA|A|1540

Current chains

Chain AA

12SrRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain A3

Aurora kinase A-interacting protein

Chain XA

Large subunit ribosomal RNA; LSU rRNA

Chain XL

39S ribosomal protein L14, mitochondrial