IL_6ZSD_102

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAA*UUAA

Length

7 nucleotides

Bulged bases

6ZSD|1|AA|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_102 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.2521

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6ZSD|1|AA|U|838
6ZSD|1|AA|A|839
6ZSD|1|AA|A|840
*
6ZSD|1|AA|U|849
6ZSD|1|AA|U|850
6ZSD|1|AA|A|851
6ZSD|1|AA|A|852

Current chains

Chain AA

12SrRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial