IL_6ZSD_110

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_110 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1129

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

6ZSD|1|XA|G|2470
6ZSD|1|XA|G|2471
6ZSD|1|XA|A|2472
6ZSD|1|XA|A|2473
6ZSD|1|XA|C|2474
6ZSD|1|XA|U|2475
6ZSD|1|XA|C|2476
6ZSD|1|XA|G|2477
6ZSD|1|XA|G|2478
*
6ZSD|1|XA|C|2653
6ZSD|1|XA|U|2654
6ZSD|1|XA|G|2655
6ZSD|1|XA|U|2656
6ZSD|1|XA|C|2657

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain XQ

39S ribosomal protein L19, mitochondrial